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Author:

Su, Ji-Guo (Su, Ji-Guo.) | Zhao, Shu-Xin (Zhao, Shu-Xin.) | Wang, Xiao-Feng (Wang, Xiao-Feng.) | Li, Chun-Hua (Li, Chun-Hua.) (Scholars:李春华) | Li, Jing-Yuan (Li, Jing-Yuan.)

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Scopus SCIE PubMed

Abstract:

Regulation of the mechanical properties of proteins plays an important role in many biological processes, and sheds light on the design of biomaterials comprised of protein. At present, strategies to regulate protein mechanical stability focus mainly on direct modulation of the force-bearing region of the protein. Interestingly, the mechanical stability of GB1 can be significantly enhanced by the binding of Fc fragments of human IgG antibody, where the binding site is distant from the force-bearing region of the protein. The mechanism of this long-range allosteric control of protein mechanics is still elusive. In this work, the impact of ligand binding on the mechanical stability of GB1 was investigated using steered molecular dynamics simulation, and a mechanism underlying the enhanced protein mechanical stability is proposed. We found that the external force causes deformation of both force-bearing region and ligand binding site. In other words, there is a long-range coupling between these two regions. The binding of ligand restricts the distortion of the binding site and reduces the deformation of the force-bearing region through a long-range allosteric communication, which thus improves the overall mechanical stability of the protein. The simulation results are very consistent with previous experimental observations. Our studies thus provide atomic-level insights into the mechanical unfolding process of GB1, and explain the impact of ligand binding on the mechanical properties of the protein through long-range allosteric regulation, which should facilitate effective modulation of protein mechanical properties.

Keyword:

Allosteric regulation Ligand binding Force-bearing Mechanical unfolding Steered molecular dynamics simulation Protein mechanics

Author Community:

  • [ 1 ] [Su, Ji-Guo]Yanshan Univ, Coll Sci, Qinhuangdao 066004, Peoples R China
  • [ 2 ] [Zhao, Shu-Xin]Yanshan Univ, Coll Sci, Qinhuangdao 066004, Peoples R China
  • [ 3 ] [Wang, Xiao-Feng]Chinese Acad Sci, Inst High Energy Phys, CAS Key Lab Biomed Effects Nanomat & Nanosafety, Beijing 100049, Peoples R China
  • [ 4 ] [Li, Jing-Yuan]Chinese Acad Sci, Inst High Energy Phys, CAS Key Lab Biomed Effects Nanomat & Nanosafety, Beijing 100049, Peoples R China
  • [ 5 ] [Li, Chun-Hua]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100024, Peoples R China

Reprint Author's Address:

  • 李春华

    [Li, Jing-Yuan]Chinese Acad Sci, Inst High Energy Phys, CAS Key Lab Biomed Effects Nanomat & Nanosafety, Beijing 100049, Peoples R China;;[Li, Chun-Hua]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100024, Peoples R China

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Source :

JOURNAL OF MOLECULAR MODELING

ISSN: 1610-2940

Year: 2016

Issue: 8

Volume: 22

2 . 2 0 0

JCR@2022

ESI Discipline: CHEMISTRY;

ESI HC Threshold:221

CAS Journal Grade:4

Cited Count:

WoS CC Cited Count: 1

SCOPUS Cited Count: 1

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 9

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