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Abstract:
Wild type (WT) and F185K mutant type of HIV-1 integrase catalytic domain (INc) were expressed and purified, and their solubility and activity were compared. The experiment results show that the solubility of F185K mutated INc was dramatically increased, whereas the activity was reduced to some extent. Subsequently, 1 800 ps molecular dynamics (MD) simulations for the WT and F185K type of INc in water were performed. The MD simulation results demonstrate that the flexibility of the catalytic loop region and the total mobility of F185K INc was reduced, which causes the decrease of activity. After the F185K mutation, changes of the salt bridge network drove the conformational change of IN, resulted in the burying of some hydrophobic residues and exposure of some other hydrophilic residues on the protein surface. Therefore, the relative hydrophilic solvent accessible surface of INc was increased. Moreover, the F185K mutation increased the hydrogen number between the INc protein and water molecule, as a consequence, the protein-water interaction was enhanced. These above changes contribute to the solubility increase of INc. It is found that the results obtained from MD simulation are in good agreement with the experiment data. The above mentioned results provides valuable insight for the understanding of protein solubility and will be helpful in protein engineering for increasing the solubility of proteins.
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PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS
ISSN: 1000-3282
Year: 2009
Issue: 9
Volume: 36
Page: 1146-1153
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JCR@2022
ESI Discipline: BIOLOGY & BIOCHEMISTRY;
JCR Journal Grade:4
CAS Journal Grade:1
Cited Count:
WoS CC Cited Count: 3
SCOPUS Cited Count: 2
ESI Highly Cited Papers on the List: 0 Unfold All
WanFang Cited Count:
Chinese Cited Count:
30 Days PV: 7
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