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Author:

He Hong-Qiu (He Hong-Qiu.) | Hu Jian-Ping (Hu Jian-Ping.) | Liu Bin (Liu Bin.) | Chen Wei-Zu (Chen Wei-Zu.) | Wang Cun-Xin (Wang Cun-Xin.)

Indexed by:

Scopus SCIE PKU CSCD

Abstract:

Wild type (WT) and F185K mutant type of HIV-1 integrase catalytic domain (INc) were expressed and purified, and their solubility and activity were compared. The experiment results show that the solubility of F185K mutated INc was dramatically increased, whereas the activity was reduced to some extent. Subsequently, 1 800 ps molecular dynamics (MD) simulations for the WT and F185K type of INc in water were performed. The MD simulation results demonstrate that the flexibility of the catalytic loop region and the total mobility of F185K INc was reduced, which causes the decrease of activity. After the F185K mutation, changes of the salt bridge network drove the conformational change of IN, resulted in the burying of some hydrophobic residues and exposure of some other hydrophilic residues on the protein surface. Therefore, the relative hydrophilic solvent accessible surface of INc was increased. Moreover, the F185K mutation increased the hydrogen number between the INc protein and water molecule, as a consequence, the protein-water interaction was enhanced. These above changes contribute to the solubility increase of INc. It is found that the results obtained from MD simulation are in good agreement with the experiment data. The above mentioned results provides valuable insight for the understanding of protein solubility and will be helpful in protein engineering for increasing the solubility of proteins.

Keyword:

solubility HIV-1 integrase molecular dynamics simulation activity

Author Community:

  • [ 1 ] [He Hong-Qiu]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 2 ] [Liu Bin]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 3 ] [Chen Wei-Zu]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 4 ] [Wang Cun-Xin]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 5 ] [Hu Jian-Ping]Leshan Normal Univ, Coll Chem & Life Sci, Leshan 614004, Peoples R China

Reprint Author's Address:

  • [Wang Cun-Xin]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China

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Source :

PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS

ISSN: 1000-3282

Year: 2009

Issue: 9

Volume: 36

Page: 1146-1153

0 . 3 0 0

JCR@2022

ESI Discipline: BIOLOGY & BIOCHEMISTRY;

JCR Journal Grade:4

CAS Journal Grade:1

Cited Count:

WoS CC Cited Count: 3

SCOPUS Cited Count: 2

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 7

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