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Author:

Zhao, Qing (Zhao, Qing.) | Wang, Dan (Wang, Dan.) (Scholars:王丹) | Li, Jianqiang (Li, Jianqiang.) (Scholars:李建强) | Akhtar, Faheem (Akhtar, Faheem.)

Indexed by:

EI Scopus SCIE

Abstract:

The accumulation and explosive growth of the electronic medical records (EMRs) make the name entity recognition (NER) technologies become critical for the meaningful use of EMR data and then the practice of evidence-based medicine. The dominate NER approaches use the distributed representation of the words and characters to build deep learning-based NER models. However, for the task of biomedical named entity recognition, there are a large amount of complicated medical terminologies that are composed of multiple words. Splitting these terminologies to learn the word and character embeddings might cause semantic ambiguities. In this paper, we treat each medical terminology as a concept and propose a concept-enhanced named entity recognition model (CNER), where the features from three different granularities (i.e., concept, word, and character) are combined together for bio-NER. The extensive experiments are conducted on two real-world corpora: fully labeled corpus and partially labeled corpus. CNER achieves the highest F1 score (fully labeled corpus: precision = 88.23, recall = 88.29, and F1 = 88.26; partially labeled corpus: precision = 87.03, recall = 88.19, and F1 = 87.61) by outperforming the baseline CW-BLSTM-CRF approach for 0.58% and 1.15% respectively, which demonstrates the effectiveness of the proposed approach.

Keyword:

Semantic information analysis Concept feature Deep neural network (DNN) Named entity recognition (NER)

Author Community:

  • [ 1 ] [Zhao, Qing]Beijing Univ Technol, Fac Informat Technol, 100 Pingleyuan, Beijing 100124, Peoples R China
  • [ 2 ] [Wang, Dan]Beijing Univ Technol, Fac Informat Technol, 100 Pingleyuan, Beijing 100124, Peoples R China
  • [ 3 ] [Li, Jianqiang]Beijing Univ Technol, Fac Informat Technol, 100 Pingleyuan, Beijing 100124, Peoples R China
  • [ 4 ] [Akhtar, Faheem]Beijing Univ Technol, Fac Informat Technol, 100 Pingleyuan, Beijing 100124, Peoples R China
  • [ 5 ] [Akhtar, Faheem]Sukkur IBA Univ, Dept Comp Sci, Sukkur 65200, Pakistan

Reprint Author's Address:

  • [Zhao, Qing]Beijing Univ Technol, Fac Informat Technol, 100 Pingleyuan, Beijing 100124, Peoples R China

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Source :

JOURNAL OF SUPERCOMPUTING

ISSN: 0920-8542

Year: 2020

Issue: 8

Volume: 76

Page: 6399-6420

3 . 3 0 0

JCR@2022

ESI Discipline: COMPUTER SCIENCE;

ESI HC Threshold:132

Cited Count:

WoS CC Cited Count: 10

SCOPUS Cited Count: 12

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 3

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