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Author:

Hao, Ming (Hao, Ming.) | Yang, Jian (Yang, Jian.) | Liu, Xiaoyang (Liu, Xiaoyang.) | Wan, Zhijiang (Wan, Zhijiang.) | Zhong, Ning (Zhong, Ning.)

Indexed by:

CPCI-S EI Scopus

Abstract:

Neuron reconstruction is an important technique in computational neuroscience. There are many neuron reconstruction algorithms, but few can generate robust result, especially when a 3D microscopic image has low single-to-noise ratio. In this paper we propose a neuron reconstruction algorithm called fast marching spanning tree (FMST), which is based on minimum spanning tree method (MST) and can improve the performance of MST. The contributions of the proposed method are as follows. Firstly, the Euclidean distance weights of edges in MST is improved to be more reasonable. Secondly, the strategy of pruning nodes is updated. Thirdly, separate branches can be merged for broken neurons. FMST and several other reconstruction methods were implemented on the 120 confocal images of single neurons in the Drosophila brain downloaded from the flycircuit database. The performance of FMST is better than some existing methods for some neurons. So it is a potentially practicable neuron construction algorithm. But its performance on some neurons is not good enough and the proposed method still needs to be improved further.

Keyword:

Minimum spanning tree Neuron morphology Neuron reconstruction

Author Community:

  • [ 1 ] [Hao, Ming]Beijing Univ Technol, Int WIC Inst, Beijing, Peoples R China
  • [ 2 ] [Yang, Jian]Beijing Univ Technol, Int WIC Inst, Beijing, Peoples R China
  • [ 3 ] [Liu, Xiaoyang]Beijing Univ Technol, Int WIC Inst, Beijing, Peoples R China
  • [ 4 ] [Zhong, Ning]Beijing Univ Technol, Int WIC Inst, Beijing, Peoples R China
  • [ 5 ] [Hao, Ming]Beijing Key Lab MRI & Brain Informat, Beijing, Peoples R China
  • [ 6 ] [Yang, Jian]Beijing Key Lab MRI & Brain Informat, Beijing, Peoples R China
  • [ 7 ] [Liu, Xiaoyang]Beijing Key Lab MRI & Brain Informat, Beijing, Peoples R China
  • [ 8 ] [Zhong, Ning]Beijing Key Lab MRI & Brain Informat, Beijing, Peoples R China
  • [ 9 ] [Hao, Ming]Beijing Int Collaborat Base Brain Informat & Wisd, Beijing, Peoples R China
  • [ 10 ] [Yang, Jian]Beijing Int Collaborat Base Brain Informat & Wisd, Beijing, Peoples R China
  • [ 11 ] [Liu, Xiaoyang]Beijing Int Collaborat Base Brain Informat & Wisd, Beijing, Peoples R China
  • [ 12 ] [Zhong, Ning]Beijing Int Collaborat Base Brain Informat & Wisd, Beijing, Peoples R China
  • [ 13 ] [Yang, Jian]Beijing Adv Innovat Ctr Future Internet Technol, Beijing, Peoples R China
  • [ 14 ] [Liu, Xiaoyang]Beijing Adv Innovat Ctr Future Internet Technol, Beijing, Peoples R China
  • [ 15 ] [Wan, Zhijiang]Beijing Adv Innovat Ctr Future Internet Technol, Beijing, Peoples R China
  • [ 16 ] [Zhong, Ning]Beijing Adv Innovat Ctr Future Internet Technol, Beijing, Peoples R China
  • [ 17 ] [Wan, Zhijiang]Maebashi Inst Technol, Dept Life Sci & Informat, Maebashi, Gunma, Japan
  • [ 18 ] [Zhong, Ning]Maebashi Inst Technol, Dept Life Sci & Informat, Maebashi, Gunma, Japan

Reprint Author's Address:

  • [Hao, Ming]Beijing Univ Technol, Int WIC Inst, Beijing, Peoples R China;;[Yang, Jian]Beijing Univ Technol, Int WIC Inst, Beijing, Peoples R China;;[Hao, Ming]Beijing Key Lab MRI & Brain Informat, Beijing, Peoples R China;;[Yang, Jian]Beijing Key Lab MRI & Brain Informat, Beijing, Peoples R China;;[Hao, Ming]Beijing Int Collaborat Base Brain Informat & Wisd, Beijing, Peoples R China;;[Yang, Jian]Beijing Int Collaborat Base Brain Informat & Wisd, Beijing, Peoples R China;;[Yang, Jian]Beijing Adv Innovat Ctr Future Internet Technol, Beijing, Peoples R China

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Source :

BRAIN INFORMATICS AND HEALTH

ISSN: 0302-9743

Year: 2016

Volume: 9919

Page: 52-60

Language: English

Cited Count:

WoS CC Cited Count: 0

SCOPUS Cited Count:

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 7

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