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Author:

Yang, Cuicui (Yang, Cuicui.) | Ji, Junzhong (Ji, Junzhong.) (Scholars:冀俊忠) | Lv, Jiawei (Lv, Jiawei.)

Indexed by:

CPCI-S EI Scopus

Abstract:

As protein-protein interactions always change with time, environments and different stages of cell cycle, the clustering analysis on static protein-protein interaction (PPI) networks can not reflect this dynamics property and is far from satisfactory. To solve it, this paper proposes a method based on time-sequenced association and Ant Colony Clustering for identifying Protein Complexes in Dynamic PPI networks (called ACC-DPC). ACC-DPC first splits a PPI network into a series of dynamics subnetworks under different time points by integrating gene expression data, and then makes the clustering analysis on each subnetwork using the ant colony clustering method. For each subnetwork, ACC-DPC begins with constructing initial protein clusters by introducing the time-sequenced association characteristic of protein complexes between two adjacent time points, and later uses the picking up and dropping down operators of ant colony clustering to accomplish the clustering process of other proteins. The experimental results on two PPI datasets demonstrate that ACC-DPC has competitive performances in identifying protein complexes of dynamic PPI networks compared with several algorithms.

Keyword:

Ant colony clustering time-sequenced association dynamic protein-protein interaction networks protein complex

Author Community:

  • [ 1 ] [Yang, Cuicui]Beijing Univ Technol, Coll Comp Sci & Technol, Beijing Municipal Key Lab Multimedia & Intelligen, Beijing, Peoples R China
  • [ 2 ] [Ji, Junzhong]Beijing Univ Technol, Coll Comp Sci & Technol, Beijing Municipal Key Lab Multimedia & Intelligen, Beijing, Peoples R China
  • [ 3 ] [Lv, Jiawei]Beijing Univ Technol, Coll Comp Sci & Technol, Beijing Municipal Key Lab Multimedia & Intelligen, Beijing, Peoples R China

Reprint Author's Address:

  • [Yang, Cuicui]Beijing Univ Technol, Coll Comp Sci & Technol, Beijing Municipal Key Lab Multimedia & Intelligen, Beijing, Peoples R China

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Source :

2016 IEEE 16TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOENGINEERING (BIBE)

ISSN: 2471-7819

Year: 2016

Page: 21-27

Language: English

Cited Count:

WoS CC Cited Count: 4

SCOPUS Cited Count: 2

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 8

Online/Total:1932/10900491
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