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Author:

Li, Xiaoyu (Li, Xiaoyu.) | Xu, Taosheng (Xu, Taosheng.) | Chen, Jinyu (Chen, Jinyu.) | Wan, Jun (Wan, Jun.) | Min, Wenwen (Min, Wenwen.)

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EI

Abstract:

Prediction of survival risk in cancer patients is crucial for understanding the underlying mechanisms of canceration in different stages. Previous studies mainly relied on single-modal omics data due to technological constraints. However, with the increasing availability of cancer omics data, researchers have focused on the use of multi-omics and multimodal data for survival analysis. The application of deep learning methods has become an option for the prediction of clinical risk. Recent advances in the attention mechanism and the variational autoencoder (VAE) have made them promising for analyzing cancer omics data. However, VAE has limitations in disregarding the importance of different features between modalities, and the introduction of an attention mechanism could address this limitation. In this study, we propose a Multimodal Attention-based VAE (MAVAE) deep learning framework using cross-modal multihead attention to integrate cancer multi-omics data for clinical risk prediction. We evaluated our approach on eight TCGA datasets. We find that (1) MAVAE outperforms traditional machine learning and recent deep learning methods; (2) Multi-modal data yields better classification performance than single-modal data; (3) The multi-head attention mechanism improves the decision-making process; (4) Clinical and genetic data are the most important modal data. Our implementation of MAVAE is available at https://github.com/wenwenmin/MAVAE. © 2023 IEEE.

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Author Community:

  • [ 1 ] [Li, Xiaoyu]Yunnan University, School of Information Science and Engineering, Yunnan, Kunming; 650091, China
  • [ 2 ] [Xu, Taosheng]Institute of Intelligent Machines, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei; 230031, China
  • [ 3 ] [Chen, Jinyu]Beijing University of Technology, School of Statistics and Data Science, Beijing; 100124, China
  • [ 4 ] [Wan, Jun]Zhongnan University of Economics and Law, School of Information and Safety Engineering, Wuhan; 430073, China
  • [ 5 ] [Min, Wenwen]Yunnan University, School of Information Science and Engineering, Yunnan, Kunming; 650091, China

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Year: 2023

Page: 1260-1265

Language: English

Cited Count:

WoS CC Cited Count: 0

SCOPUS Cited Count: 1

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 5

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