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Author:

Zhai, Hao (Zhai, Hao.) | Liu, Jing (Liu, Jing.) | Hong, Bei (Hong, Bei.) | Liu, Jiazheng (Liu, Jiazheng.) | Xie, Qiwei (Xie, Qiwei.) | Han, Hua (Han, Hua.)

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EI

Abstract:

Currently, most state-of-the-art pipelines for 3D micro-connectomic reconstruction deal with neuron over-segmentation, agglomeration and subcellular compartment (nuclei, mitochondria, synapses, etc.) detection separately. Inspired by the proofreading consensus of experts, we established a paradigm to acquire priori knowledge of cellular characteristics and ultrastructures, as well as determine the connectivity of neural circuits simultaneously. Following this novel paradigm, we were keen to bring the Intra- and Inter-Cellular Awareness back when Tracking and Segmenting neurons in connectomics. Our proposed method (II-CATS) utilizes few-shot learning techniques to encode the internal neurite representation and its learnable components, which could significantly impact neuron tracings. We further go beyond the original expected run length (ERL) metric by focusing on biological constraints (bERL) or spanning from the nucleus to spines (nERL). With the evaluation of these metrics, we perform typical experiments on multiple electron microscopy datasets on diverse animals and scales. In particular, our proposed method is naturally suitable for tracking neurons that have been identified by staining. © 2023 CC-BY 4.0, H. Zhai, J. Liu, B. Hong, J. Liu, Q. Xie & H. Han.

Keyword:

Image segmentation Cellular neural networks Neurons Learning systems

Author Community:

  • [ 1 ] [Zhai, Hao]State Key Laboratory of Multimodal Artificial Intelligence Systems, Institute of Automation, Chinese Academy of Sciences, China
  • [ 2 ] [Zhai, Hao]School of Future Technology, University of the Chinese Academy of Sciences, China
  • [ 3 ] [Liu, Jing]Research Center for Brain-inspired Intelligence, Institute of Automation, Chinese Academy of Sciences, China
  • [ 4 ] [Hong, Bei]Changping Laboratory, China
  • [ 5 ] [Liu, Jiazheng]State Key Laboratory of Multimodal Artificial Intelligence Systems, Institute of Automation, Chinese Academy of Sciences, China
  • [ 6 ] [Liu, Jiazheng]School of Future Technology, University of the Chinese Academy of Sciences, China
  • [ 7 ] [Xie, Qiwei]Research Base of Beijing Modern Manufacturing Development, Beijing University of Technology, China
  • [ 8 ] [Han, Hua]State Key Laboratory of Multimodal Artificial Intelligence Systems, Institute of Automation, Chinese Academy of Sciences, China
  • [ 9 ] [Han, Hua]School of Future Technology, University of the Chinese Academy of Sciences, China
  • [ 10 ] [Han, Hua]Research Center for Brain-inspired Intelligence, Institute of Automation, Chinese Academy of Sciences, China

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Year: 2023

Volume: 227

Page: 1691-1712

Language: English

Cited Count:

WoS CC Cited Count: 0

SCOPUS Cited Count:

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 4

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