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Abstract:
Based on a new way to compute check points, this paper presents a 'Block Recursive' sequence alignment algorithm, which can run in a time requirement between 1.5mn and 3mn in general cases but between 1.5mn and 2mn for sequences with high similarities. Still, the algorithm keeps a linear space requirement and always guarantees an optimal alignment result. Some experiments show that it runs at least 10% faster than the Hirschberg algorithm if the two compared sequences has a normalized edit distance less than 0.25. © 2008 IEEE.
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Year: 2008
Page: 604-607
Language: English
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WoS CC Cited Count: 0
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ESI Highly Cited Papers on the List: 0 Unfold All
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30 Days PV: 11
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