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Author:

Ye, J.-R. (Ye, J.-R..) | Dong, X.-G. (Dong, X.-G..) | Lu, H.-Y. (Lu, H.-Y..) | Hao, M.-Q. (Hao, M.-Q..) | Su, X.-L. (Su, X.-L..) | Xin, R.-L. (Xin, R.-L..) | Yu, S.-Q. (Yu, S.-Q..) | Feng, X. (Feng, X..) | Yan, H. (Yan, H..) | He, X. (He, X..) | Zeng, Y. (Zeng, Y..)

Indexed by:

Scopus PKU CSCD

Abstract:

Objective: To analyze the molecular epidemiological characteristic of HIV-1 B'/C strains prevalent in Beijing. Methods: Plasma samples were collected from 200 newly diagnosed HTV-1 B'/C individuals reported during 2006 to 2010 in Beijing. The gag gene fragments were amplified from RNA template extracted from plasma with reverse transcription (RT) and nested polymerase chain reaction (PCR). And the sequences were analyzed by phylogenetic methods and Entropy analysis. Results: A total of 159 sequences were successfully amplified from the gag genes of which 147 was CRF07_BC and 12 CRF08_BC. There were 3 main subclusters in CRF07_BC phylogenetic tree and they were named as subcluster IDU-Vlax (89 sequences), subcluster IDU-Min (22 sequences) and subcluster MSM (34 sequences) based on transmission. No international reference strain was closely related with these three subclusters except ior one strain identified in Taiwan. All CRF07_BC recombinant strains were remarkable for their low interpalient diversity in gag genes (3.7%, 3.3% and 2.0% for isolates from IDU-Max, IDU-Min and MSM respectively). When compared with subcluster IDU-Max, there were 32 and 41 significantly different sites of nucleotide polymorphism compositions in subclusers IDU-Min and MSM. Conclusion: This is the first report of describing the existence of three main epidemic subclusters in CRF07_BC strains prevalent in Beijing. And IDU-Max subcluster is the dominant strain. The CRF07_BC in Beijing are less diverse than other strains and may be derived from a common ancestor. Copyright © 2013 by the Chinese Medical Association.

Keyword:

HIV; Molecular epidemiology; Nested-PCR

Author Community:

  • [ 1 ] [Ye, J.-R.]Beijing Center for Disease Prevention and Control, Beijing 100013, China
  • [ 2 ] [Lu, H.-Y.]Beijing Center for Disease Prevention and Control, Beijing 100013, China
  • [ 3 ] [Hao, M.-Q.]Beijing Center for Disease Prevention and Control, Beijing 100013, China
  • [ 4 ] [Su, X.-L.]Beijing Center for Disease Prevention and Control, Beijing 100013, China
  • [ 5 ] [Xin, R.-L.]Beijing Center for Disease Prevention and Control, Beijing 100013, China
  • [ 6 ] [Yan, H.]College of Life Science and Bio-engineering, Beijing University of Technology, Beijing 100124, China
  • [ 7 ] [He, X.]Beijing Center for Disease Prevention and Control, Beijing 100013, China

Reprint Author's Address:

  • [Lu, H.-Y.]Beijing Center for Disease Prevention and Control, Beijing 100013, China

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Source :

National Medical Journal of China

ISSN: 0376-2491

Year: 2013

Issue: 29

Volume: 93

Page: 2301-2304

Cited Count:

WoS CC Cited Count:

SCOPUS Cited Count: 2

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 6

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