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Author:

Zhou, M (Zhou, M.) | Zhang, W (Zhang, W.) | Cheng, YH (Cheng, YH.) | Ji, MJ (Ji, MJ.) | Xu, XJ (Xu, XJ.)

Indexed by:

Scopus SCIE PKU CSCD

Abstract:

Here a molecular docking and 3D-QSAR study is reported on a series of 2-(oxalic monoamido)benzoic acid (OBA) inhibitors and protein tyrosine phosphatase 1B (PTP1B). Firstly, a flexible docking method (FlexX) was used to place 12 OBA inhibitors into the active site of PTP1B. The predicted binding affinities of the molecules were found to be linearly relevant to their experimental activities (pK(i), non-cross-validated R-2=0.859). After that, 33 OBA inhibitors were fixed into the predicted binding conformation, and were studied using CoMFA method. The resulting CoMFA model (cross-validated q(2) = 0.650) could predict the activity of 6 molecules in the test set within a mean unsigned error of 0.177, and match the characters of our binding mode perfectly. The discovered binding mode could provide hints to further modification of inhibitors.

Keyword:

molecular docking 3D-QSAR protein tyrosine phosphatase CoMFA

Author Community:

  • [ 1 ] Grad Univ Chinese Acad Sci, Coll Chem & Chem Engn, Beijing 100049, Peoples R China
  • [ 2 ] Peking Univ, Coll Chem & Mol Engn, Beijing 100871, Peoples R China
  • [ 3 ] Beijing Univ Technol, Coll Environm & Energy Engn, Beijing 100022, Peoples R China

Reprint Author's Address:

  • [Zhou, M]Grad Univ Chinese Acad Sci, Coll Chem & Chem Engn, Beijing 100049, Peoples R China

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Source :

ACTA CHIMICA SINICA

ISSN: 0567-7351

Year: 2005

Issue: 23

Volume: 63

Page: 2131-2136

2 . 5 0 0

JCR@2022

ESI Discipline: CHEMISTRY;

JCR Journal Grade:3

Cited Count:

WoS CC Cited Count: 6

SCOPUS Cited Count:

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 2

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