The　current　research　develops　a　mathematical　model　and　control　strategies　to　address　two　major　problems　force　fighting　and　precise　position　tracking　for　a　hybrid　actuation　system　composed　of　servo-hydraulic　actuator　and　electro-mechanical　actuator　(SHA/EMA).　The　force　fighting　and　desired　position　tracking　are　two　essential　problems　of　the　SHA/EMA　actuation　system　for　a　large　civil　aircraft.　The　trajectory-based　fractional　order　proportional　integral　derivative　(FOPID)　control　for　the　SHA/EMA　actuation　system　is　proposed,　tuned　with　the　help　of　the　particle　swarm　optimization　(PSO)　technique　and　implemented　with　the　support　of　the　FOMCON　toolbox　in　Matlab.　The　experiments　are　performed　under　different　external　aerodynamic　loads　that　the　aircraft　usually　experiences　during　flight　operations.　The　results　show　that　the　proposed　method　shows　better　results　for　tracking　performance,　force　fighting　and　load　rejection　ability.