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Author:

Ji, Junzhong (Ji, Junzhong.) (Scholars:冀俊忠) | Yao, Yao (Yao, Yao.)

Indexed by:

EI Scopus SCIE

Abstract:

The functional connectivity provides new insights into the mechanisms of the human brain at network-level, which has been proved to be an effective biomarker for brain disease classification. Recently, machine learning methods have played an important role in functional connectivity classification, among which convolutional neural network (CNN) based methods become a new hot topic since they can extract topological features in the brain network. However, the conventional CNN-based methods haven't taken sparse connectivity patterns (SCPs) of the human brain into consideration, which may lead to redundancy of the topological features, and limit their performance and generalization. To solve it, we propose a novel CNN-based model with graphical Lasso (CNNGLasso) to extract sparse topological features for brain disease classification. First, we develop a novel graphical Lasso model for revealing the SCPs at group-level. Then, the SCPs are used to guide the topological feature extraction. Finally, the obtained sparse topological features are used to classify the patients from normal controls. The experiment results on the ABIDE dataset demonstrate that the CNNGLasso outperforms the others on various performances. Besides, the abnormal brain regions derived from the trained model are consistent with the previous investigations, which further proves the application prospect of the CNNGLasso.

Keyword:

functional connectivity graphical Lasso Brain modeling functional magnetic resonance imaging Convolutional neural networks Feature extraction brain disease Machine learning Convolutional neural network Diseases Covariance matrices Support vector machines sparse topological feature

Author Community:

  • [ 1 ] [Ji, Junzhong]Beijing Univ Technol, Fac Informat Technol, Beijing 100124, Peoples R China
  • [ 2 ] [Yao, Yao]Beijing Univ Technol, Fac Informat Technol, Beijing 100124, Peoples R China
  • [ 3 ] [Ji, Junzhong]Beijing Univ Technol, Beijing Artificial Intelligence Inst, Beijing Municipal Key Lab Multimedia & Intelligen, Beijing 100124, Peoples R China
  • [ 4 ] [Yao, Yao]Beijing Univ Technol, Beijing Artificial Intelligence Inst, Beijing Municipal Key Lab Multimedia & Intelligen, Beijing 100124, Peoples R China

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Source :

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

ISSN: 1545-5963

Year: 2021

Issue: 6

Volume: 18

Page: 2327-2338

4 . 5 0 0

JCR@2022

ESI Discipline: COMPUTER SCIENCE;

ESI HC Threshold:87

JCR Journal Grade:1

Cited Count:

WoS CC Cited Count: 11

SCOPUS Cited Count: 15

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 11

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