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Author:

Zhuang, Xujie (Zhuang, Xujie.) | Liu, Bo (Liu, Bo.) | Long, Junqi (Long, Junqi.) | Wang, Huina (Wang, Huina.) | Yu, Jiangyong (Yu, Jiangyong.) | Ji, Xinchan (Ji, Xinchan.) | Li, Jinmeng (Li, Jinmeng.) | Zhu, Nian (Zhu, Nian.) | Li, Lujia (Li, Lujia.) | Chen, Yuhaoran (Chen, Yuhaoran.) | Liu, Zhidong (Liu, Zhidong.) | Zhao, Shuangtao (Zhao, Shuangtao.)

Indexed by:

Scopus SCIE

Abstract:

Background Diffuse large B-cell lymphoma (DLBCL) exhibits remarkable heterogeneity but still remains undiagnosed in identifying the subpopulation of DLBCL to predict the prognosis and guide clinical treatment.Methods Molecular subgroups were identified in gene expression data from GSE10846 by a consensus clustering algorithm. And gene set enrichment analysis, immune infiltration, and the proposed cell cycle algorithm were applied to explore the biological functions of different subtypes. Meanwhile, univariate and multivariate Cox regression analyses were used to evaluate independent prognostic factors of DLBCL. Finally, the prognostic model, including some key genes screened by Lasso regression, Random Forest algorithm, and point-biserial correlation, was constructed by an optimal classifier from seven machine learning algorithms and validated by another three external datasets (GSE34171, GSE87371, GSE31312).ResultsComprehensive genomic analysis of 1,143 DLBCL samples identify 2 molecularly, prognostically relevant subtypes: immune-enriched (IME) and cell-cycle-enriched (CCE). Then a new predictive model including seven key genes (SERPING1, TIMP2, NME1, DCTPP1, RFC4, POLE2, and SNRPD1) was developed with high prediction accuracy (88.6%) and strong predictive power (AUC = 0.973) based on the Support Vector Machine (SVM) algorithm in 414 patients from GSE10846. The predictive power was similar in another three testing sets (HR > 1.400, p < 0.05).Conclusion This model could evaluate survival independently with strong predictive power compared with other clinical risk factors. Our study constructed a reliable model to predict two new subtypes of DLBCL patients, which could guide the implementation of individualized treatment.

Keyword:

Molecular subgroup Diffuse large B-cell lymphoma Machine learning Prognosis

Author Community:

  • [ 1 ] [Zhuang, Xujie]Beijing Univ Technol, Fac Informat Technol, Sch Software Engn, Beijing 100124, Peoples R China
  • [ 2 ] [Long, Junqi]Beijing Univ Technol, Fac Informat Technol, Sch Software Engn, Beijing 100124, Peoples R China
  • [ 3 ] [Wang, Huina]Beijing Univ Technol, Fac Informat Technol, Sch Software Engn, Beijing 100124, Peoples R China
  • [ 4 ] [Ji, Xinchan]Beijing Univ Technol, Fac Informat Technol, Sch Software Engn, Beijing 100124, Peoples R China
  • [ 5 ] [Li, Jinmeng]Beijing Univ Technol, Fac Informat Technol, Sch Software Engn, Beijing 100124, Peoples R China
  • [ 6 ] [Zhu, Nian]Beijing Univ Technol, Fac Informat Technol, Sch Software Engn, Beijing 100124, Peoples R China
  • [ 7 ] [Li, Lujia]Beijing Univ Technol, Fac Informat Technol, Sch Software Engn, Beijing 100124, Peoples R China
  • [ 8 ] [Chen, Yuhaoran]Beijing Univ Technol, Fac Informat Technol, Sch Software Engn, Beijing 100124, Peoples R China
  • [ 9 ] [Liu, Bo]Massey Univ, Sch Math & Computat Sci, Auckland, New Zealand
  • [ 10 ] [Yu, Jiangyong]Chinese Acad Med Sci, Inst Geriatr Med, Natl Ctr Gerontol, Dept Med Oncol,Beijing Hosp, Beijing 100730, Peoples R China
  • [ 11 ] [Liu, Zhidong]Capital Med Univ, Beijing Chest Hosp, Dept Thorac Surg, Beijing TB & Thorac Tumor Res Inst, Beijing 101149, Peoples R China
  • [ 12 ] [Zhao, Shuangtao]Capital Med Univ, Beijing Chest Hosp, Dept Thorac Surg, Dept Breast Surg,Beijing TB & Thorac Tumor Res Ins, Beijing 101149, Peoples R China

Reprint Author's Address:

  • [Zhao, Shuangtao]Capital Med Univ, Beijing Chest Hosp, Dept Thorac Surg, Dept Breast Surg,Beijing TB & Thorac Tumor Res Ins, Beijing 101149, Peoples R China;;

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Source :

CLINICAL & TRANSLATIONAL ONCOLOGY

ISSN: 1699-048X

Year: 2023

Issue: 4

Volume: 26

Page: 936-950

3 . 4 0 0

JCR@2022

ESI Discipline: CLINICAL MEDICINE;

ESI HC Threshold:14

Cited Count:

WoS CC Cited Count: 0

SCOPUS Cited Count: 1

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 5

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