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Author:

Rong, Yaohua (Rong, Yaohua.) | Zhao, Sihai Dave (Zhao, Sihai Dave.) | Zheng, Xia (Zheng, Xia.) | Li, Yi (Li, Yi.)

Indexed by:

Scopus SCIE

Abstract:

Wide heterogeneity exists in cancer patients' survival, ranging from a few months to several decades. To accurately predict clinical outcomes, it is vital to build an accurate predictive model that relates the patients' molecular profiles with the patients' survival. With complex relationships between survival and high-dimensional molecular predictors, it is challenging to conduct nonparametric modeling and irrelevant predictors removing simultaneously. In this article, we build a kernel Cox proportional hazards semi-parametric model and propose a novel regularized garrotized kernel machine (RegGKM) method to fit the model. We use the kernel machine method to describe the complex relationship between survival and predictors, while automatically removing irrelevant parametric and nonparametric predictors through a LASSO penalty. An efficient high-dimensional algorithm is developed for the proposed method. Comparison with other competing methods in simulation shows that the proposed method always has better predictive accuracy. We apply this method to analyze a multiple myeloma dataset and predict the patients' death burden based on their gene expressions. Our results can help classify patients into groups with different death risks, facilitating treatment for better clinical outcomes.

Keyword:

multiple myeloma survival prediction Cox proportional hazards model high-dimensional data reproducing kernel Hilbert space kernel machine

Author Community:

  • [ 1 ] [Rong, Yaohua]Beijing Univ Technol, Fac Sci, Beijing, Peoples R China
  • [ 2 ] [Zheng, Xia]Beijing Univ Technol, Fac Sci, Beijing, Peoples R China
  • [ 3 ] [Zhao, Sihai Dave]Univ Illinois, Dept Stat, Champaign, IL USA
  • [ 4 ] [Li, Yi]Univ Michigan, Dept Biostat, Ann Arbor, MI USA
  • [ 5 ] [Li, Yi]Univ Michigan, Dept Biostat, 1415 Washington Hts, Ann Arbor, MI 48109 USA

Reprint Author's Address:

  • [Li, Yi]Univ Michigan, Dept Biostat, 1415 Washington Hts, Ann Arbor, MI 48109 USA;;

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Source :

STATISTICS IN MEDICINE

ISSN: 0277-6715

Year: 2023

Issue: 1

Volume: 43

Page: 1-15

2 . 0 0 0

JCR@2022

ESI Discipline: SOCIAL SCIENCES, GENERAL;

ESI HC Threshold:9

Cited Count:

WoS CC Cited Count: 1

SCOPUS Cited Count: 1

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 10

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