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Author:

Wang, Q. (Wang, Q..) | Fan, T. (Fan, T..) | Jia, R. (Jia, R..) | Zhang, N. (Zhang, N..) | Zhao, L. (Zhao, L..) | Zhong, R. (Zhong, R..) | Sun, G. (Sun, G..)

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EI Scopus SCIE

Abstract:

Corona Virus Disease 2019 (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), poses a serious threat to human health and life safety. How to effectively prevent and treat COVID-19 is crucial. In this study, we used the inhibitors of nonstructural protein Nsp14 of SARS-CoV-2 to perform the quantitative structure activity relationship (QSAR) modelling for the first time. Based on different dataset division strategies, we selected partial least square (PLS) and multiple linear regression (MLR) methods to develop easily interpretable and reproducible QSAR models with 2D molecular descriptors. All models complied with the strict QSAR validation principles of OECD and internationally recognized validation metrics. The best model contained two molecular descriptors with the following statistical parameters: R2 = 0.7796, QLOO2= 0.7373, Rtest2 = 0.8539 and CCCtest = 0.9073. Obviously, the model exhibited good prediction performance and can be used for quickly predicting the inhibitory activity of unknown compounds against Nsp14. Mechanistic interpretation identified the detailed relationship between molecular structure information and inhibitory activity. The best QSAR model was used to predict the inhibitory activity of 263 true external compounds without experimental values against Nsp14, and the prediction reliability was analyzed and discussed. Molecular docking and ADMET analyses were conducted for compounds with higher similarity to the modelling compounds. Finally, two compounds were identified as potential candidate drugs of targeting Nsp14. The current work lays a solid theoretical foundation for the discovery of inhibitors targeting Nsp14, and has an important reference significance for the development of anti-COVID-19 drugs. © 2024 The Author(s)

Keyword:

Nsp14 inhibitor ADMET Docking QSAR COVID-19 SARS-CoV-2

Author Community:

  • [ 1 ] [Wang Q.]Beijing Key Laboratory of Environmental and Viral Oncology, Faculty of Environment and Life, Beijing University of Technology, Beijing, 100124, China
  • [ 2 ] [Fan T.]Beijing Key Laboratory of Environmental and Viral Oncology, Faculty of Environment and Life, Beijing University of Technology, Beijing, 100124, China
  • [ 3 ] [Fan T.]Department of Medical Technology, Beijing Pharmaceutical University of Staff and Workers, Beijing, 100079, China
  • [ 4 ] [Jia R.]Department of Biology, Faculty of Environment and Life, Beijing University of Technology, Beijing, 100124, China
  • [ 5 ] [Zhang N.]Beijing Key Laboratory of Environmental and Viral Oncology, Faculty of Environment and Life, Beijing University of Technology, Beijing, 100124, China
  • [ 6 ] [Zhao L.]Beijing Key Laboratory of Environmental and Viral Oncology, Faculty of Environment and Life, Beijing University of Technology, Beijing, 100124, China
  • [ 7 ] [Zhong R.]Beijing Key Laboratory of Environmental and Viral Oncology, Faculty of Environment and Life, Beijing University of Technology, Beijing, 100124, China
  • [ 8 ] [Sun G.]Beijing Key Laboratory of Environmental and Viral Oncology, Faculty of Environment and Life, Beijing University of Technology, Beijing, 100124, China

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Source :

Arabian Journal of Chemistry

ISSN: 1878-5352

Year: 2024

Issue: 3

Volume: 17

6 . 0 0 0

JCR@2022

Cited Count:

WoS CC Cited Count: 0

SCOPUS Cited Count: 2

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 7

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