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Author:

Li, Hui (Li, Hui.) | Wang, Jin-Lian (Wang, Jin-Lian.)

Indexed by:

EI Scopus PKU CSCD

Abstract:

Gene expression profiles of gastric cancer and counterpart normal tissues were analyzed with bioinformatics and machine learning methods to address the problem of discovery of biomarker genes and model of the tumor molecular diagnosis. Firstly, a support vector machine (SVM) was employed to find the feature gene subset with best classification performance for distinguishing cancerous tissues and the counterparts. And then, using genetic algorithm filter feature genes based on the classification rate of SVM. The decision tree was employed to extract rule subsets from the feature genes. These rules were tested by the test dataset with cross validation method, and the diagnosis model was constructed with these rules. The results indicate the gastric biomarkers and the diagnosis model would give more instruction in biological experiments and clinical diagnosis reference model.

Keyword:

Support vector machines Statistical tests Tissue engineering Diseases Trees (mathematics) Tumors Decision trees Diagnosis Histology Biomarkers Genetic algorithms Predictive analytics Molecular biology Classification (of information) Learning systems Gene expression

Author Community:

  • [ 1 ] [Li, Hui]College of Computer Science and Technology, Beijing University of Technology, Beijing 100124, China
  • [ 2 ] [Wang, Jin-Lian]College of Electronic Information and Control Engineering, Beijing University of Technology, Beijing 100124, China

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Source :

Acta Electronica Sinica

ISSN: 0372-2112

Year: 2008

Issue: 5

Volume: 36

Page: 989-992

Cited Count:

WoS CC Cited Count: 0

SCOPUS Cited Count:

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 6

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