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Abstract:
The classification of different cancer subtypes and feature subset selection is of great importance in cancer diagnosis and has recently received a great deal of attention in the field of bioinformatics. The purpose of this study is to develop a method of classifying tumors to specific categories and select a small subset of genes for classification based on gene expression profiles. Firstly, a new metric for class separability was proposed in order to remove the genes irrelevant to the classification task, and then a support vector machine was applied to distinguish different cancer types. The feature subset selection process is performed by pair-wise redundancy analysis and the sequential floating forward search method after irrelevant genes have been removed. We analyzed the gene expression profiles of human acute leukemia as a test case, and the results showed the feasibility and effectiveness of the method proposed.
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Source :
Acta Electronica Sinica
ISSN: 0372-2112
Year: 2005
Issue: 4
Volume: 33
Page: 651-655
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ESI Highly Cited Papers on the List: 0 Unfold All
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30 Days PV: 7
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