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Author:

Wang Xue-Dong (Wang Xue-Dong.) | Shang Wen-Hui (Shang Wen-Hui.) | Li Xiao-Qin (Li Xiao-Qin.) | Chang Yu (Chang Yu.) (Scholars:常宇)

Indexed by:

Scopus SCIE PKU CSCD

Abstract:

DNA methylation abnormalities are frequent events in early tumors. Additionally, DNA methylation is relatively stable over time and can be non-invasively detected in blood. Therefore, DNA methylation has a great potential to become an early diagnostic biomarker of cancers. In order to find potential diagnostic markers for lung squamous cell carcinoma (LUSC), a method for identifying LUSC-specific candidate diagnostic markers was proposed. We screened 6 LUSC-specific CpGs by comparing the methylation profiles of 172 samples from LUSC patients, 42 normal lung samples, 184 normal blood samples, and 1 306 samples from patients with other cancers which was collected from TCGA (The Cancer GenomeAtlas) database. A supportvector machine model was constructed to distinguish LUSC patients from normal controls. The combination of six sites achieved 93%-99% sensitivity in predicting LUSC, 100% specificity in excluding all normal samples, and similar to 99% specificity in excluding other cancers. Overall, our study provides promising biomarkers for the diagnosis of LUSC.

Keyword:

lung squamous cell carcinoma early diagnosis specific biomarkers DNA methylation

Author Community:

  • [ 1 ] [Wang Xue-Dong]Beijing Univ Technol, Sch Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 2 ] [Shang Wen-Hui]Beijing Univ Technol, Sch Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 3 ] [Li Xiao-Qin]Beijing Univ Technol, Sch Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 4 ] [Chang Yu]Beijing Univ Technol, Sch Life Sci & Bioengn, Beijing 100124, Peoples R China

Reprint Author's Address:

  • [Li Xiao-Qin]Beijing Univ Technol, Sch Life Sci & Bioengn, Beijing 100124, Peoples R China

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Source :

PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS

ISSN: 1000-3282

Year: 2019

Issue: 7

Volume: 46

Page: 680-688

0 . 3 0 0

JCR@2022

ESI Discipline: BIOLOGY & BIOCHEMISTRY;

ESI HC Threshold:169

JCR Journal Grade:4

Cited Count:

WoS CC Cited Count: 0

SCOPUS Cited Count:

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 7

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