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Author:

Chang, Shan (Chang, Shan.) | Li, Chun-Hua (Li, Chun-Hua.) | Gong, Xin-Qi (Gong, Xin-Qi.) | Jiao, Xiong (Jiao, Xiong.) | Chen, Wei-Zu (Chen, Wei-Zu.) | Wang, Cun-Xin (Wang, Cun-Xin.)

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EI Scopus

Abstract:

Identifying protein interface is crucial for the prediction of protein-protein interactions and for protein functional classification. In this work, the protein structure is modeled as an undirected graph with the conservation aminoacid residues the vertices and all atom contacts between them the edges. We find that the conservation residue networks are characterized by intermediate values of clustering coefficient and characteristic path length, which are the typical property of small-world networks. The residues on the protein interfaces typically have higher degree and lower clustering coefficient values than that of the surface residues. Additionally, it is detected that the spatial clustering of the conservation residues is a general phenomenon, consistent with the cooperative nature of residues in determining the structure and function. These results indicate that the conservation residue network propensities can give us some new parameters in protein-protein interface prediction. © 2007 IEEE.

Keyword:

Amino acids Proteins Computer graphics Database systems Computer simulation Bioinformatics Algorithms

Author Community:

  • [ 1 ] [Chang, Shan]College of Life Science and Bioengineering, Beijing University of Technology, Beijing, China
  • [ 2 ] [Li, Chun-Hua]College of Life Science and Bioengineering, Beijing University of Technology, Beijing, China
  • [ 3 ] [Gong, Xin-Qi]College of Life Science and Bioengineering, Beijing University of Technology, Beijing, China
  • [ 4 ] [Jiao, Xiong]College of Life Science and Bioengineering, Beijing University of Technology, Beijing, China
  • [ 5 ] [Chen, Wei-Zu]College of Life Science and Bioengineering, Beijing University of Technology, Beijing, China
  • [ 6 ] [Wang, Cun-Xin]College of Life Science and Bioengineering, Beijing University of Technology, Beijing, China

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Year: 2007

Page: 29-32

Language: English

Cited Count:

WoS CC Cited Count: 0

SCOPUS Cited Count: 2

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 10

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