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Author:

Wen Jian-Xin (Wen Jian-Xin.) | Wang Xue-Dong (Wang Xue-Dong.) | Li Xiao-Qin (Li Xiao-Qin.) | Chang Yu (Chang Yu.) (Scholars:常宇)

Indexed by:

Scopus SCIE PKU CSCD

Abstract:

To identify signature genes for the pathogenesis of breast cancer, which provides a theoretical support for prevention and early diagnosis of breast cancer. The pattern recognition method was used to analysis the genome-wide gene expression data which was collected from the breast cancer part of TCGA (The Cancer Genome Atlas) database.336 gene expression signature genes were selected by means of a combination of statistical methods such as correlation, t test, confidence interval, etc. The accuracy can be as high as 98% through the machine learning method modeling, which is higher compared with the previous study. The KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway analysis and GO (Gene Ontology) enrichment analysis indicated the significant correlation among eight and eighteen kinds of genes respectively. A functional analysis of the part of the eight pathways showed theirs close relationship at the level of gene regulation which indicted the identified signature genes play an important role in the pathogenesis of breast cancer and is very important for understanding the pathogenesis of breast cancer and the early diagnosis of breast cancer.

Keyword:

tumor prediction gene expression breast cancer pattern recognition early diagnosis

Author Community:

  • [ 1 ] [Wen Jian-Xin]Beijing Univ Technol, Sch Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 2 ] [Wang Xue-Dong]Beijing Univ Technol, Sch Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 3 ] [Li Xiao-Qin]Beijing Univ Technol, Sch Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 4 ] [Chang Yu]Beijing Univ Technol, Sch Life Sci & Bioengn, Beijing 100124, Peoples R China

Reprint Author's Address:

  • [Li Xiao-Qin]Beijing Univ Technol, Sch Life Sci & Bioengn, Beijing 100124, Peoples R China

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Source :

PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS

ISSN: 1000-3282

Year: 2017

Issue: 11

Volume: 44

Page: 1016-1025

0 . 3 0 0

JCR@2022

ESI Discipline: BIOLOGY & BIOCHEMISTRY;

ESI HC Threshold:215

CAS Journal Grade:4

Cited Count:

WoS CC Cited Count: 2

SCOPUS Cited Count: 2

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 7

Online/Total:496/10561408
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