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Author:

Ma, Ling (Ma, Ling.) | Muhammad, Tahir (Muhammad, Tahir.) | Wang, Hongyang (Wang, Hongyang.) | Du, Guangyuan (Du, Guangyuan.) | Sakhawat, Ali (Sakhawat, Ali.) | Wei, Yazi (Wei, Yazi.) | Khan, Aamir Ali (Khan, Aamir Ali.) | Cong, Xianling (Cong, Xianling.) | Huang, Yinghui (Huang, Yinghui.)

Indexed by:

Scopus SCIE PubMed

Abstract:

Hypermethylation of gene promoter has been indicated for the contribution of gene silencing, and DNA demethylating drugs, such as 5-aza-2'-deoxycytidine (DAC), has been used clinically for cancer treatment. However, the reason why a proportion of genes with hypermethylated promoter exhibit high expression levels remains unclear and this drug is not much successful as expected in use. Furthermore, CpG islands (CGIs) are found to be located in not only promotors, but also in gene bodies. By RNA-seq and reduced representation bisulfite sequencing, we found the mismatch between the level of promoter methylation and gene expression. By chromatin Immunoprecipitation-quantitative polymerase chain reaction and luciferase reporter assay, we identified putative promoters in gene body, and proved the activities of putative promoters were affected by the methylation level of the CGI nearby. DAC can reverse the DNA hypermethylation at promoter CGIs effectively but not the CGIs in gene body. We also found that TET1 could demethylate CGIs both in promoter and gene body. Furthermore, we revealed a novel mechanism that H3K36me3 could affect the activity of putative promoter, and 5hmC recruited MeCP2 and CREB1 as a coactivator to SETD2 promoter, to enhance its gene expression and result in increased H3K36me3 in gene body. Our results concluded that putative promoters existed in the gene bodies, and TET1 could influence the transcriptional activity of putative promoters by intragenic demethylation.

Keyword:

5hmC DNA methylation TET1 gene body putative promoters

Author Community:

  • [ 1 ] [Ma, Ling]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 2 ] [Muhammad, Tahir]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 3 ] [Wang, Hongyang]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 4 ] [Du, Guangyuan]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 5 ] [Wei, Yazi]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 6 ] [Khan, Aamir Ali]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 7 ] [Huang, Yinghui]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 8 ] [Sakhawat, Ali]Beijing Inst Technol, Coll Life Sci, Beijing, Peoples R China
  • [ 9 ] [Cong, Xianling]Jilin Univ, China Japan Union Hosp, Tissue Bank, Changchun, Peoples R China

Reprint Author's Address:

  • 黄映辉

    [Huang, Yinghui]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China

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Source :

JOURNAL OF CELLULAR PHYSIOLOGY

ISSN: 0021-9541

Year: 2020

Issue: 10

Volume: 235

Page: 6711-6724

5 . 6 0 0

JCR@2022

ESI Discipline: MOLECULAR BIOLOGY & GENETICS;

ESI HC Threshold:219

Cited Count:

WoS CC Cited Count: 3

SCOPUS Cited Count: 3

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 4

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