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Author:

Zhai, Hao (Zhai, Hao.) | Liu, Jing (Liu, Jing.) | Hong, Bei (Hong, Bei.) | Liu, Jiazheng (Liu, Jiazheng.) | Xie, Qiwei (Xie, Qiwei.) (Scholars:谢启伟) | Han, Hua (Han, Hua.)

Indexed by:

CPCI-S

Abstract:

Currently, most state-of-the-art pipelines for 3D micro-connectomic reconstruction deal with neuron over-segmentation, agglomeration and subcellular compartment (nuclei, mitochondria, synapses, etc.) detection separately. Inspired by the proofreading consensus of experts, we established a paradigm to acquire priori knowledge of cellular characteristics and ultrastructures, as well as determine the connectivity of neural circuits simultaneously. Following this novel paradigm, we were keen to bring the Intra- and Inter-Cellular Awareness back when Tracking and Segmenting neurons in connectomics. Our proposed method (II-CATS) utilizes few-shot learning techniques to encode the internal neurite representation and its learnable components, which could significantly impact neuron tracings. We further go beyond the original expected run length (ERL) metric by focusing on biological constraints (bERL) or spanning from the nucleus to spines (nERL). With the evaluation of these metrics, we perform typical experiments on multiple electron microscopy datasets on diverse animals and scales. In particular, our proposed method is naturally suitable for tracking neurons that have been identified by staining.

Keyword:

connectomics neuron segmentation neuron tracking few-shot learning

Author Community:

  • [ 1 ] [Zhai, Hao]Chinese Acad Sci, Inst Automat, State Key Lab Multimodal Artificial Intelligence, Beijing, Peoples R China
  • [ 2 ] [Liu, Jiazheng]Chinese Acad Sci, Inst Automat, State Key Lab Multimodal Artificial Intelligence, Beijing, Peoples R China
  • [ 3 ] [Han, Hua]Chinese Acad Sci, Inst Automat, State Key Lab Multimodal Artificial Intelligence, Beijing, Peoples R China
  • [ 4 ] [Zhai, Hao]Univ Chinese Acad Sci, Sch Future Technol, Beijing, Peoples R China
  • [ 5 ] [Liu, Jiazheng]Univ Chinese Acad Sci, Sch Future Technol, Beijing, Peoples R China
  • [ 6 ] [Han, Hua]Univ Chinese Acad Sci, Sch Future Technol, Beijing, Peoples R China
  • [ 7 ] [Liu, Jing]Chinese Acad Sci, Inst Automat, Res Ctr Brain Inspired Intelligence, Beijing, Peoples R China
  • [ 8 ] [Han, Hua]Chinese Acad Sci, Inst Automat, Res Ctr Brain Inspired Intelligence, Beijing, Peoples R China
  • [ 9 ] [Hong, Bei]Changping Lab, Beijing, Peoples R China
  • [ 10 ] [Xie, Qiwei]Beijing Univ Technol, Res Base Beijing Modern Mfg Dev, Beijing, Peoples R China

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Source :

MEDICAL IMAGING WITH DEEP LEARNING, VOL 227

ISSN: 2640-3498

Year: 2023

Volume: 227

Page: 1691-1712

Cited Count:

WoS CC Cited Count:

SCOPUS Cited Count:

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 7

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